hmdlab / ARG-BERTLinks
☆10Updated 2 months ago
Alternatives and similar repositories for ARG-BERT
Users that are interested in ARG-BERT are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 9 months ago
- ☆14Updated last month
- Integrative virome pipeline☆13Updated 7 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- ☆20Updated 3 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆13Updated 2 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆23Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆11Updated 2 months ago
- ☆11Updated 2 months ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆11Updated 4 years ago
- 16S pipeline using qiime2 created with snakemake☆11Updated last month
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- ☆32Updated last year
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- ☆13Updated last year
- Phage-Host Interaction Search Tool☆27Updated 10 months ago
- ☆14Updated 2 weeks ago
- cognac: COre GeNe Alignment Concatenation☆9Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- This is a repository for CAMPER.☆14Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated 7 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- ☆18Updated 4 years ago
- Host prediction for phages☆25Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago