hmdlab / ARG-BERTLinks
☆10Updated 10 months ago
Alternatives and similar repositories for ARG-BERT
Users that are interested in ARG-BERT are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 months ago
- 16S pipeline using qiime2 created with snakemake☆12Updated last month
- Integrative virome pipeline☆13Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 10 months ago
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- ☆17Updated last month
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Updated last month
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Updated 5 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 3 weeks ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated 3 weeks ago
- ☆13Updated last year
- Pan-genome Analysis☆12Updated 9 months ago
- This is a repository for CAMPER.☆16Updated last year
- ☆14Updated last year
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- metabolic heatmap☆22Updated 6 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 3 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated 2 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Updated 7 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 4 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year