Alternatives and similar repositories for Capsid_community

Users that are interested in Capsid_community are comparing it to the libraries listed below

• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆68Updated 3 years ago
• MattiaPandolfoVR / MetaPhage
  ☆38Updated 2 years ago
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆57Updated 7 months ago
• yosuken / MAGRE
  ☆14Updated 4 years ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆44Updated 2 years ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆63Updated last month
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆83Updated last week
• kelwyres / Bactabolize
  ☆42Updated 7 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆38Updated 2 years ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆14Updated 2 years ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆76Updated 8 months ago
• metashot / awemags
  aweMAGs: a fully automated workflow for eukariotic MAGs
  ☆18Updated 2 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆53Updated last year
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆80Updated last year
• ziyewang / COMEBin
  ☆65Updated last year
• a-h-b / binny
  ☆33Updated 2 years ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆75Updated 3 weeks ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆40Updated 2 months ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated 2 years ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆63Updated 10 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆40Updated 3 months ago
• jlw-ecoevo / gRodon2
  ☆49Updated last week
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated this week
• Carrion-lab / bacLIFE
  ☆50Updated last month
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆29Updated last year
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆21Updated 2 years ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated 2 years ago
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆37Updated 2 months ago
• carolzhou / multiPhATE
  Throughput PhATE processing of draft or finished phage genomes
  ☆14Updated 4 years ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆33Updated 3 months ago