Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
☆88Jul 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for plassembler
Users that are interested in plassembler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jul 4, 2026Updated 2 weeks ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Finding regions of similarity between plasmids☆17Updated this week
- Plasmid analysis using rearrangement distances☆56Updated this week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 7 months ago
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆663Jul 10, 2026Updated last week
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 5 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆218Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆108Jun 25, 2023Updated 3 years ago
- ☆33Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆42Feb 9, 2022Updated 4 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Rapid & standardized genome annotation using protein structural information☆70Jul 2, 2026Updated 2 weeks ago
- ☆257Jul 1, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆203Jun 10, 2026Updated last month
- Phage Annotation using Protein Structures☆167Jul 8, 2026Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆115Dec 5, 2025Updated 7 months ago
- geNomad: Identification of mobile genetic elements☆323Mar 29, 2026Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago