gbouras13 / plassemblerLinks
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
☆83Updated 2 weeks ago
Alternatives and similar repositories for plassembler
Users that are interested in plassembler are comparing it to the libraries listed below
Sorting:
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated this week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 2 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- tiara – a tool for DNA sequence classification☆74Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- ☆66Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Updated last week
- Prediction of prophages from bacterial genomes☆81Updated this week
- Precise host read removal☆115Updated 5 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Prophage Activity Estimator☆31Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated 2 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆102Updated 2 years ago
- ☆62Updated last year
- ☆24Updated 7 years ago
- Bifrost graph gene caller.☆98Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 5 years ago