gbouras13 / plassemblerLinks
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
☆75Updated 2 months ago
Alternatives and similar repositories for plassembler
Users that are interested in plassembler are comparing it to the libraries listed below
Sorting:
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- Reorients assembled microbial sequences☆126Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Precise host read removal☆103Updated 2 weeks ago
- ☆24Updated 6 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆47Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆60Updated last year
- ☆20Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Bifrost graph gene caller.☆95Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- ☆53Updated 2 months ago
- whole genome MLST analysis☆47Updated 3 months ago
- SeqSero2☆38Updated last year
- ☆57Updated last year