gbouras13 / plassembler
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
☆61Updated 3 months ago
Alternatives and similar repositories for plassembler:
Users that are interested in plassembler are comparing it to the libraries listed below
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Reorients assembled microbial sequences☆116Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆76Updated 7 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated last year
- IslandPath standalone software☆32Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆29Updated this week
- whole genome MLST analysis☆41Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated this week
- ☆20Updated 7 months ago
- ☆69Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆48Updated 4 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated last week
- code repo for mobileOG-db☆35Updated 3 months ago
- IS mapping software☆53Updated 3 years ago
- Bifrost graph gene caller.☆93Updated 7 months ago