MarioniLab / MNN2017
Code for the MNN manuscript figures
☆50Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for MNN2017
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 4 years ago
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Updated 4 years ago
- ☆47Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆49Updated 6 years ago
- Mouse cell atlas☆59Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- ☆53Updated 3 years ago
- ☆58Updated 5 years ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- ☆56Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- ☆53Updated last month
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆39Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆68Updated 3 years ago
- ☆55Updated 2 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago