MarioniLab / MNN2017Links
Code for the MNN manuscript figures
☆50Updated 6 years ago
Alternatives and similar repositories for MNN2017
Users that are interested in MNN2017 are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆47Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Mouse cell atlas☆61Updated 5 years ago
- ☆55Updated 4 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 9 months ago
- Clone of the Bioconductor repository for the scran package.☆43Updated 11 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated 2 years ago
- ☆17Updated 6 years ago
- ☆85Updated 5 years ago
- ☆59Updated 11 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆63Updated 4 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year