Code for the MNN manuscript figures
☆49Oct 1, 2018Updated 7 years ago
Alternatives and similar repositories for MNN2017
Users that are interested in MNN2017 are comparing it to the libraries listed below
Sorting:
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆77Jan 9, 2023Updated 3 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data.☆14Feb 3, 2019Updated 7 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆170Jan 26, 2024Updated 2 years ago
- Residual Component Analysis☆10Jul 4, 2017Updated 8 years ago
- ☆59Updated this week
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- Clone of the Bioconductor repository for the scran package.☆47Feb 25, 2026Updated 3 weeks ago
- ☆29Feb 1, 2023Updated 3 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- Panoramic stitching of single cell data☆297Jul 14, 2025Updated 8 months ago
- Collection of public scRNA-Seq datasets used by our group☆173May 4, 2021Updated 4 years ago
- ☆69May 2, 2018Updated 7 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- ☆16Dec 11, 2018Updated 7 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago
- ☆13Sep 4, 2025Updated 6 months ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- ☆21Aug 30, 2018Updated 7 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 3 years ago
- ☆145Apr 19, 2025Updated 11 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- Python package for writing flow cytometry standard (.fcs) files☆11Nov 9, 2025Updated 4 months ago