An implementation of MNN (Mutual Nearest Neighbors) correct in python.
☆78Jan 9, 2023Updated 3 years ago
Alternatives and similar repositories for mnnpy
Users that are interested in mnnpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Batch balanced KNN☆180Oct 11, 2023Updated 3 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 8 years ago
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 9 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆129Jun 29, 2021Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆387Oct 3, 2024Updated 2 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Oct 26, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python implementation of the Loom file format - http://loompy.org☆150Dec 16, 2024Updated last year
- ☆30Feb 1, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆48May 20, 2026Updated 5 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆249May 23, 2020Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- A repo with random short code snippets☆41May 27, 2019Updated 7 years ago
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- RNA Velocity generalized through dynamical modeling☆514Feb 25, 2026Updated 8 months ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Dec 29, 2019Updated 6 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆74Oct 7, 2026Updated 3 weeks ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 11 months ago
- ☆13May 14, 2019Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- ☆12May 14, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- ☆20Mar 28, 2017Updated 9 years ago
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week