An implementation of MNN (Mutual Nearest Neighbors) correct in python.
☆77Jan 9, 2023Updated 3 years ago
Alternatives and similar repositories for mnnpy
Users that are interested in mnnpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 11 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆271Apr 26, 2026Updated last month
- ☆29Feb 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- ☆19Mar 6, 2019Updated 7 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Clone of the Bioconductor repository for the scran package.☆48May 20, 2026Updated 3 weeks ago
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Dec 29, 2019Updated 6 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 6 months ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- RNA Velocity generalized through dynamical modeling☆504Feb 25, 2026Updated 3 months ago
- ☆73Apr 17, 2024Updated 2 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Python implementation of the Loom file format - http://loompy.org☆149Dec 16, 2024Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆73Apr 12, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆127Jun 29, 2021Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆62Aug 30, 2022Updated 3 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- Python package for writing flow cytometry standard (.fcs) files☆11Nov 9, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆23Jun 14, 2022Updated 4 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 8 months ago
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- Imputation method for scRNA-seq based on low-rank approximation☆80Dec 14, 2023Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Jul 31, 2019Updated 6 years ago