An implementation of MNN (Mutual Nearest Neighbors) correct in python.
☆77Jan 9, 2023Updated 3 years ago
Alternatives and similar repositories for mnnpy
Users that are interested in mnnpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Batch balanced KNN☆180Oct 11, 2023Updated 3 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 8 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Oct 5, 2026Updated last week
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Mar 6, 2019Updated 7 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 9 years ago
- Single-cell RNA-seq Gene Expression Recovery☆116Nov 28, 2024Updated last year
- ☆30Feb 1, 2023Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆48May 20, 2026Updated 4 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆217Jan 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 10 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆247May 23, 2020Updated 6 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Dec 29, 2019Updated 6 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 7 months ago
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Python implementation of the Loom file format - http://loompy.org☆150Dec 16, 2024Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆72Oct 7, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- URD - Reconstruction of Branching Developmental Trajectories☆129Jun 29, 2021Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- ☆64Apr 5, 2024Updated 2 years ago
- A python package for chromVAR☆35May 1, 2023Updated 3 years ago
- ☆73Apr 17, 2024Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Jul 3, 2019Updated 7 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- Python package for writing flow cytometry standard (.fcs) files☆11Nov 9, 2025Updated 11 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆99Jul 31, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 8 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- Convert between AnnData and SingleCellExperiment☆154Oct 6, 2026Updated last week
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 11 months ago
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆81Dec 14, 2023Updated 2 years ago