Alternatives and similar repositories for monet

Users that are interested in monet are comparing it to the libraries listed below

• cole-trapnell-lab / cicero
  ☆12Updated last year
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆28Updated last year
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 7 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• vals / Blog
  ☆38Updated last week
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆44Updated last year
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 6 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 3 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• vals / python-gprofiler
  ☆13Updated 6 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 4 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆106Updated 2 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆46Updated 2 years ago
• jhsiao999 / peco
  Predict cell cycle phase in a continuum from single-cell RNA-seq data
  ☆12Updated 5 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 8 years ago
• NikolayOskolkov / DeepLearningSingleCellBiology
  Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis
  ☆19Updated 6 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• ivirshup / constclust
  Consistent Clusters for scRNA-seq
  ☆11Updated 4 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆39Updated 4 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆15Updated 6 years ago
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆19Updated 7 years ago
• Teichlab / covid19_MS1
  Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".
  ☆14Updated 5 years ago
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆21Updated 2 years ago