Alternatives and similar repositories for scVI-reproducibility:

Users that are interested in scVI-reproducibility are comparing it to the libraries listed below

• klarman-cell-observatory / scPhere
  ☆99Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆41Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆110Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆60Updated 11 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆56Updated this week
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated 2 years ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆153Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆58Updated 8 months ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆102Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆33Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆119Updated last month
• nitzanlab / biolord
  ☆77Updated 8 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆115Updated 7 months ago
• YosefLab / SymSim
  ☆25Updated 6 months ago
• Genentech / sVAE
  ☆60Updated last year
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 4 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆74Updated 3 months ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆87Updated last month
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆74Updated last year
• rajewsky-lab / novosparc
  ☆127Updated last year
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆69Updated 2 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago