romain-lopez / scVI-reproducibilityLinks
Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
☆57Updated 6 years ago
Alternatives and similar repositories for scVI-reproducibility
Users that are interested in scVI-reproducibility are comparing it to the libraries listed below
Sorting:
- ☆102Updated 2 years ago
- ☆48Updated 6 years ago
- Deep Embedding for Single-cell Clustering☆88Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- Deep learning for single-cell transcript counts☆89Updated 7 months ago
- ☆100Updated last year
- Conditional out-of-distribution prediction☆63Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- covolutional neural network based coexpression analysis☆79Updated 5 years ago
- ☆26Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 9 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆68Updated last year
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆62Updated 5 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- spatial transcriptome, single cell☆70Updated 2 years ago
- Multi-omic velocity inference☆111Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- A software package for analyzing snapshots of developmental processes☆148Updated 3 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- ☆131Updated last year
- data and model repository for single-cell data☆135Updated last year
- ☆84Updated 5 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago