Alternatives and similar repositories for scVI-reproducibility

Users that are interested in scVI-reproducibility are comparing it to the libraries listed below

• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆88Updated last year
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆88Updated 9 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• KrishnaswamyLab / SAUCIE
  ☆102Updated last year
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆46Updated 2 years ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆103Updated 2 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆112Updated last year
• epierson9 / ZIFA
  Zero-inflated dimensionality reduction algorithm for single-cell data
  ☆110Updated 5 years ago
• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆97Updated 6 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆76Updated 11 months ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆92Updated 5 years ago
• wang-research / VASC
  Variational autoencoder for single cell RNA-seq datasets
  ☆44Updated 8 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆61Updated last year
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago
• YosefLab / SymSim
  ☆26Updated last year
• theislab / dca
  Deep count autoencoder for denoising scRNA-seq data
  ☆265Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆70Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆116Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• imsb-uke / scGAN
  Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
  ☆87Updated last year
• zcang / SpaOTsc
  ☆45Updated 5 months ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆143Updated last year
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 3 months ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 4 years ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year