Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
☆57Dec 15, 2018Updated 7 years ago
Alternatives and similar repositories for scVI-reproducibility
Users that are interested in scVI-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆19Jan 5, 2021Updated 5 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Deep learning for single-cell transcript counts☆91Mar 14, 2025Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,727Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jan 7, 2020Updated 6 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- Deep count autoencoder for denoising scRNA-seq data☆275Mar 21, 2024Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- ☆102Oct 1, 2024Updated 2 years ago
- GrandPrix☆17May 27, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Dec 11, 2018Updated 7 years ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 5 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 8 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 9 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆250May 23, 2020Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Single cell perturbation prediction☆362Dec 5, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- ☆48Jun 21, 2019Updated 7 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated 2 years ago
- ☆30Feb 1, 2023Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SemI-SUpervised generative Autoencoder models for single cell data☆18Mar 30, 2021Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 11 months ago
- Python implementation of the Loom file format - http://loompy.org☆151Dec 16, 2024Updated last year
- Simple scVI implementation☆13Nov 2, 2026Updated last week
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Oct 22, 2020Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆54Jan 6, 2021Updated 5 years ago
Are these results useful?