QSong-github / scGCN
scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
☆40Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for scGCN
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- cTPnet Package☆23Updated 2 years ago
- scLearn:Learning for single cell assignment☆34Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- ☆40Updated 10 months ago
- Spatial Cellular Estimator for Tumors☆42Updated this week
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago
- ☆26Updated 2 years ago
- ☆79Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆27Updated 4 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 4 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆29Updated 7 months ago
- spatial transcriptome, single cell☆65Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- ☆28Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆105Updated 10 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated 2 weeks ago
- overview of spatial datasets☆69Updated 9 months ago
- ☆15Updated 3 years ago