QSong-github / scGCN
scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
☆39Updated 2 years ago
Related projects: ⓘ
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- cTPnet Package☆23Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- ☆73Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆56Updated 4 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- Reproducing result from the paper☆33Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆55Updated 3 years ago
- Spatially resolved transcriptomic analysis☆46Updated last year
- SPROD: Spatial expression profiling de-noising☆32Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆52Updated last year
- Spatial Cellular Estimator for Tumors☆40Updated last month
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 2 months ago
- Single cell omics biology annotations☆45Updated this week
- scLearn：Learning for single cell assignment☆34Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆72Updated 9 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 3 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆38Updated last year
- ☆19Updated 2 years ago
- overview of spatial datasets☆66Updated 7 months ago
- ☆20Updated 3 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- Predict RNA velocity through deep learning☆60Updated 9 months ago
- domain adaptation of spatial and single-cell transcriptome☆22Updated 7 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆102Updated 7 months ago
- ☆15Updated 3 years ago
- ☆100Updated 2 years ago
- ☆39Updated 8 months ago
- Gene group activity utility functions for Scanpy☆49Updated last month