scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
☆40Aug 11, 2022Updated 3 years ago
Alternatives and similar repositories for scGCN
Users that are interested in scGCN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Dec 24, 2021Updated 4 years ago
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Nov 19, 2023Updated 2 years ago
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 6 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- single-cell RNA-seq clustering☆10Sep 14, 2020Updated 5 years ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆155Jul 25, 2024Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆70Jul 7, 2026Updated 2 weeks ago
- code for "Self-supervised edge features for improved Graph Neural Network training", <arxivlink>☆24Dec 14, 2020Updated 5 years ago
- single-cell graph autoencoder☆25Oct 14, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆21Jun 22, 2022Updated 4 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 4 months ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 8 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- BWMR (Bayesian Weighted Mendelian Randomization)☆22Jun 14, 2023Updated 3 years ago
- 该存储库，主要存放根据自己所掌握的NGS差异表达分析技术方法为主，具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 6 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- ☆17Jul 8, 2024Updated 2 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 3 years ago
- ☆18Dec 1, 2017Updated 8 years ago
- Causal discovery of gene regulatory programs from single-cell genomics☆20Sep 5, 2025Updated 10 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Jan 8, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆109Jul 6, 2023Updated 3 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆471Feb 9, 2026Updated 5 months ago
- ☆14Nov 29, 2025Updated 7 months ago
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 8 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- ☆67Jul 13, 2023Updated 3 years ago