☆13Sep 18, 2017Updated 8 years ago
Alternatives and similar repositories for ClonEvol
Users that are interested in ClonEvol are comparing it to the libraries listed below
Sorting:
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 3 months ago
- ☆11Sep 22, 2025Updated 5 months ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆40Feb 26, 2026Updated last week
- ☆12Nov 21, 2023Updated 2 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Oct 8, 2024Updated last year
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆118Aug 19, 2020Updated 5 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Feb 27, 2026Updated last week
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆22Aug 28, 2025Updated 6 months ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Mar 26, 2018Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- Source files for EDAV Fall 2021 Tues / Thurs Community Contribution Project☆24Oct 19, 2022Updated 3 years ago
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆24Feb 28, 2025Updated last year
- ☆168Feb 23, 2026Updated last week
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated 2 weeks ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- ⚙️ A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆75Feb 19, 2026Updated 2 weeks ago
- An R package for inferring the subclonal architecture of tumors☆122Oct 13, 2023Updated 2 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated last month
- An R package to time somatic mutations☆66Dec 12, 2020Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- Somatic point mutation caller☆34Jan 7, 2026Updated last month
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…