ChrisMaherLab / ClonEvol
☆13Updated 7 years ago
Alternatives and similar repositories for ClonEvol
Users that are interested in ClonEvol are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆40Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Rocking R at UMCCR☆9Updated 4 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 5 months ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- DriverPower☆26Updated 3 months ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 3 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 11 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated 11 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆22Updated 4 months ago
- Utility functions for FACETS☆35Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆16Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- Genomic Association Tester☆31Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 8 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆14Updated 3 weeks ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ☆38Updated 4 years ago