chenlingantelope / HarmonizationSCANVIView external linksLinks
Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
☆13Jul 15, 2022Updated 3 years ago
Alternatives and similar repositories for HarmonizationSCANVI
Users that are interested in HarmonizationSCANVI are comparing it to the libraries listed below
Sorting:
- SemI-SUpervised generative Autoencoder models for single cell data☆18Mar 30, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- A study to compare methods for clustering of scRNA-seq data☆45Jul 19, 2024Updated last year
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated last year
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 4 months ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- scDeepCluster for Single Cell RNA-seq data☆105Jul 10, 2024Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- ☆13Sep 30, 2024Updated last year
- ☆48Jun 21, 2019Updated 6 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 6 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Oct 21, 2024Updated last year
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Jun 6, 2025Updated 8 months ago
- ☆63Sep 13, 2024Updated last year
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Nov 25, 2019Updated 6 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17Nov 28, 2025Updated 2 months ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Dec 29, 2019Updated 6 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- A python package for calculating local cell specific networks☆17Nov 17, 2023Updated 2 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆17Jan 5, 2021Updated 5 years ago
- Python package for dimension reduction of high-dimensional biological data.☆16May 23, 2018Updated 7 years ago