klarman-cell-observatory / forceatlas2Links
Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d
☆22Updated 5 years ago
Alternatives and similar repositories for forceatlas2
Users that are interested in forceatlas2 are comparing it to the libraries listed below
Sorting:
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated this week
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆36Updated 8 months ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- ☆42Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- ☆35Updated 6 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated last year
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆35Updated 7 years ago
- .h5mu files interface for Seurat☆32Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 2 weeks ago
- Single-cell Graph Cuts Optimization☆16Updated last year
- Multi-omics factor analysis v2☆49Updated 11 months ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 6 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Tools for analyzing Slide-seq data☆31Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- A python package for chromVAR☆30Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago