Alternatives and similar repositories for forceatlas2:

Users that are interested in forceatlas2 are comparing it to the libraries listed below

• gokceneraslan / pyannotables
  Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
  ☆11Updated 2 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• Shamir-Lab / DOMINO
  Network-based module discovery algorithm with high rate of empirically-validated term calls
  ☆10Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated this week
• debsin / dropClust
  Version 2.1.0 released
  ☆23Updated 5 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• ShobiStassen / PARC
  ☆42Updated 7 months ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 5 years ago
• soedinglab / merlot
  Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
  ☆18Updated 4 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 3 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆19Updated last year
• brian-cleary / CS-SMAF
  ☆18Updated 7 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆21Updated last year
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• pkerpedjiev / negspy
  Python NGS Repository
  ☆9Updated 7 months ago
• sellerslab / gemini
  GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
  ☆15Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• gosling-lang / gosling-docs
  Documentations and Tutorials of Gosling.js
  ☆12Updated 3 years ago
• MarioniLab / EmptyDrops2017
  Code for the empty droplet and cell detection project from the HCA Hackathon.
  ☆20Updated 6 years ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated 11 months ago
• aforr / LineageOT
  ☆11Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated this week
• phoenixding / tbsp
  Trajectory Inference Based on SNP information.
  ☆24Updated 9 months ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• linnarsson-lab / loom-viewer
  Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
  ☆35Updated 2 months ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year