Collection of public scRNA-Seq datasets used by our group
☆171May 4, 2021Updated 5 years ago
Alternatives and similar repositories for scRNA.seq.datasets
Users that are interested in scRNA.seq.datasets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- Analysis of single cell RNA-seq data course☆681Apr 11, 2022Updated 4 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Jan 31, 2022Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Clone of the Bioconductor repository for the scater package.☆95Apr 29, 2026Updated last month
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,748Updated this week
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆23Jun 14, 2022Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆340Updated this week
- ☆47Jun 21, 2019Updated 6 years ago
- ☆21Aug 30, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 5 years ago
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆30Jul 20, 2020Updated 5 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 7 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Simple simulation of single-cell RNA sequencing data☆235May 20, 2026Updated 3 weeks ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆382Oct 3, 2024Updated last year
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆115Apr 7, 2026Updated 2 months ago
- ☆26Apr 3, 2019Updated 7 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 4 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- Accurate and robust imputation of scRNA-seq data☆101Aug 21, 2019Updated 6 years ago