Alternatives and similar repositories for scRNA.seq.datasets:

Users that are interested in scRNA.seq.datasets are comparing it to the libraries listed below

• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆190Updated 2 years ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆182Updated 4 years ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆185Updated 2 years ago
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆225Updated last month
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆314Updated last year
• hemberg-lab / SC3
  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
  ☆125Updated 3 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆205Updated last year
• navinlabcode / copykat
  ☆228Updated 9 months ago
• brianhie / scanorama
  Panoramic stitching of single cell data
  ☆278Updated 11 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 10 months ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆138Updated 11 months ago
• velocyto-team / velocyto.py
  RNA velocity estimation in Python
  ☆165Updated last year
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 4 years ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆286Updated 11 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆152Updated 2 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆278Updated 2 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆147Updated last month
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆234Updated last year
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆205Updated last year
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆173Updated last year
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆186Updated last year
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆221Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆144Updated 4 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆290Updated 4 years ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆249Updated last year
• Teichlab / bbknn
  Batch balanced KNN
  ☆155Updated last year