hemberg-lab / scRNA.seq.datasetsLinks
Collection of public scRNA-Seq datasets used by our group
☆173Updated 4 years ago
Alternatives and similar repositories for scRNA.seq.datasets
Users that are interested in scRNA.seq.datasets are comparing it to the libraries listed below
Sorting:
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Bench-marking classification tools for scRNA-seq data☆188Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆214Updated 2 years ago
- Simple simulation of single-cell RNA sequencing data☆231Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- Multi-Omics Factor Analysis☆249Updated 5 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆215Updated last year
- Panoramic stitching of single cell data☆289Updated 2 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆227Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆319Updated 2 years ago
- RNA velocity estimation in Python☆172Updated this week
- ☆85Updated 5 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆128Updated 4 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆373Updated last year
- Tools and methods for analysis of single cell assay data in R☆252Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆273Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆205Updated 2 years ago
- Cell types enrichment analysis☆202Updated last year
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆237Updated 3 months ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Test genes for Spatial Variation☆176Updated last year
- Scanpy use cases.☆87Updated 5 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago