hemberg-lab / scRNA.seq.datasets

Related projects ⓘ

Alternatives and complementary repositories for scRNA.seq.datasets

• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆177Updated 3 years ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆183Updated 2 years ago
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆189Updated last year
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆154Updated 9 months ago
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆218Updated this week
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆306Updated last year
• 10XGenomics / single-cell-3prime-paper
  ☆83Updated 4 years ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆184Updated 7 months ago
• hemberg-lab / SC3
  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
  ☆119Updated 3 years ago
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆200Updated last year
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆135Updated 7 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆143Updated last year
• brianhie / scanorama
  Panoramic stitching of single cell data
  ☆265Updated 7 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆383Updated 8 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆88Updated 3 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆86Updated 5 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆218Updated last year
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆186Updated 2 months ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆173Updated 8 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆170Updated 2 months ago
• sunduanchen / Scissor
  Scissor package
  ☆189Updated 6 months ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆131Updated last year
• theislab / paga
  Mapping out the coarse-grained connectivity structures of complex manifolds.
  ☆208Updated 4 years ago
• velocyto-team / velocyto.py
  RNA velocity estimation in Python
  ☆160Updated last year
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆274Updated 4 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆185Updated 5 months ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆271Updated 6 months ago
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆216Updated 2 years ago
• YosefLab / VISION
  Signature Analysis and Visualization for Single-Cell RNA-seq
  ☆160Updated 5 months ago