sstadick / rumiLinks
Rust UMI Directional Adjacency Deduplicator
☆14Updated 5 years ago
Alternatives and similar repositories for rumi
Users that are interested in rumi are comparing it to the libraries listed below
Sorting:
- A FASTA/FASTQ format parser library☆20Updated last year
- Toolkit for manipulating FASTA and SAM files☆20Updated last year
- Quality of life improvements for Bioinformatics in Python.☆31Updated last month
- Singular Genomics Demultiplexing Tool☆16Updated last year
- gia: Genomic Interval Arithmetic☆64Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆54Updated 2 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 8 months ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆41Updated 2 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 3 weeks ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆16Updated 9 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆17Updated last month
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆21Updated 9 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- drunk on perbase pileups and lua expressions☆19Updated 5 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago