Alternatives and similar repositories for rumi

Users that are interested in rumi are comparing it to the libraries listed below

• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 11 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 6 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 3 weeks ago
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆27Updated 2 months ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆30Updated 2 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated this week
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 3 months ago
• vgl-hub / rdeval
  Multithreaded read analysis
  ☆18Updated last week
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆15Updated 4 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 2 months ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 4 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆18Updated last month
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆36Updated 3 months ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 2 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 6 months ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated 2 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 9 months ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• PacificBiosciences / minorseq
  Minor Variant Calling and Phasing Tools
  ☆15Updated 3 years ago
• wdecoster / kyber
  ☆21Updated 7 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated 2 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆45Updated last month
• natir / fpa
  Filter of Pairwise Alignement
  ☆45Updated 3 years ago