An algorithm for mapping cell state transitions.
☆29Mar 3, 2023Updated 2 years ago
Alternatives and similar repositories for pCreode
Users that are interested in pCreode are comparing it to the libraries listed below
Sorting:
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- ☆69May 2, 2018Updated 7 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Jan 10, 2024Updated 2 years ago
- ☆25Feb 25, 2025Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations☆24Dec 17, 2021Updated 4 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 20, 2026Updated last week
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated last year
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆12Jan 15, 2021Updated 5 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Feb 8, 2020Updated 6 years ago
- ☆10Apr 6, 2022Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. MCMCpack — Markov Chain Monte Carlo (MCMC) Package. Homepage: https://CRAN…☆13Aug 28, 2024Updated last year
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆77Jan 9, 2023Updated 3 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Feb 8, 2019Updated 7 years ago
- ☆13Sep 30, 2024Updated last year
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Jan 20, 2025Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- ☆11May 30, 2023Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆134Nov 28, 2023Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Jul 12, 2023Updated 2 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- ☆13Feb 16, 2019Updated 7 years ago
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Nov 25, 2019Updated 6 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago