yjzhang / uncurl_pythonLinks
UNCURL is a tool for single cell RNA-seq data analysis.
☆15Updated 2 years ago
Alternatives and similar repositories for uncurl_python
Users that are interested in uncurl_python are comparing it to the libraries listed below
Sorting:
- Version 2.1.0 released☆23Updated 5 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 7 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆16Updated 6 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆19Updated 7 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- ☆37Updated last week
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆12Updated last year
- ☆12Updated last year
- ☆12Updated 3 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- ☆29Updated 2 years ago