AllonKleinLab / SPRING

Related projects: ⓘ

• AllonKleinLab / SPRING_dev
  ☆64Updated 5 months ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• mhorlbeck / ScreenProcessing
  ☆62Updated last year
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆59Updated 9 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆88Updated 3 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆64Updated 4 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆56Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆77Updated last month
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆84Updated 3 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆67Updated 9 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆73Updated 2 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆72Updated last year
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆82Updated 2 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆74Updated last year
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 8 years ago
• YosefLab / scone
  ☆53Updated 6 months ago
• PierreBSC / Viral-Track
  ☆55Updated 4 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆75Updated 4 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆84Updated 2 months ago
• cole-trapnell-lab / cicero-release
  ☆56Updated 2 weeks ago
• indrops / indrops
  Pipeline for processing inDrops sequencing data
  ☆73Updated 5 years ago
• rpolicastro / scProportionTest
  ☆56Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆117Updated 3 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• drisso / bioc2016singlecell
  Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
  ☆73Updated 7 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆40Updated last year
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• velocyto-team / velocyto-notebooks
  ☆55Updated 6 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆68Updated 3 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆70Updated 6 years ago