AllonKleinLab / SPRINGLinks
☆68Updated 7 years ago
Alternatives and similar repositories for SPRING
Users that are interested in SPRING are comparing it to the libraries listed below
Sorting:
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- ☆69Updated last year
- ☆64Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆57Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆75Updated last month
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆59Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- ☆53Updated 3 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- ☆46Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Tools for single-cell data processing☆124Updated last year
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆86Updated 11 months ago
- ☆67Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- ☆55Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last month
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆101Updated last year