☆69May 2, 2018Updated 7 years ago
Alternatives and similar repositories for SPRING
Users that are interested in SPRING are comparing it to the libraries listed below
Sorting:
- ☆71Apr 17, 2024Updated last year
- Pipeline for processing inDrops sequencing data☆75Oct 26, 2018Updated 7 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 3 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Feb 8, 2020Updated 6 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 6 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Scanpy use cases.☆90Sep 4, 2020Updated 5 years ago
- R package for bcbio single-cell RNA-seq analysis.☆30Sep 9, 2024Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- RNA velocity estimation in R☆195Sep 14, 2023Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆135Nov 28, 2023Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Mar 8, 2026Updated last week
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Mar 3, 2017Updated 9 years ago
- Repository for the scLiTr (single-cell Lineage Tracing analysis) python package☆15Updated this week
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆48Jul 20, 2022Updated 3 years ago
- ☆29Feb 1, 2023Updated 3 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆237May 23, 2020Updated 5 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 9 months ago
- Panoramic stitching of single cell data☆297Jul 14, 2025Updated 8 months ago