mtmorgan / TENxGenomicsLinks
Interface to 10x Genomics' 1.3 m single cell data set
☆18Updated 7 years ago
Alternatives and similar repositories for TENxGenomics
Users that are interested in TENxGenomics are comparing it to the libraries listed below
Sorting:
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated this week
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 3 weeks ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 5 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 10 months ago
- ☆10Updated 7 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Updated 10 months ago
- ☆10Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- R interface to morpheus.js heatmap widget☆38Updated 5 years ago
- The blog of tidyomics☆14Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 5 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago