time course regulatory analysis from paired gene expression and chromatin accessibility time course data
☆11Nov 10, 2023Updated 2 years ago
Alternatives and similar repositories for TimeReg
Users that are interested in TimeReg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Oct 7, 2025Updated 9 months ago
- ☆18Mar 11, 2024Updated 2 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆14Oct 16, 2025Updated 9 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆12Oct 23, 2024Updated last year
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆17Jul 3, 2026Updated 3 weeks ago
- Intuitionistic Programming Language☆12Dec 28, 2013Updated 12 years ago
- Groupoids vs 1-Types☆11Nov 8, 2018Updated 7 years ago
- sciFLT is a Fuzzy Logic Toolbox for scilab☆11Oct 8, 2019Updated 6 years ago
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 7 months ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Jun 2, 2023Updated 3 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- My PhD thesis☆12Jan 7, 2020Updated 6 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆18May 13, 2026Updated 2 months ago
- Approaches to identify Differential Rhythmicity☆11Nov 28, 2025Updated 7 months ago
- ☆12Mar 31, 2026Updated 3 months ago
- A versatile interface to the knockoff methodology.☆26Apr 1, 2022Updated 4 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- This repository contains the code for simulating the growth of a Biofilm after attachment using Molecular dynamics simulation methods. Th…☆11May 21, 2021Updated 5 years ago
- A formula interface for model-first PCA; PCA for the people!☆13Aug 23, 2024Updated last year
- List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.☆14Sep 3, 2016Updated 9 years ago
- Julia package for performing rigorous arithmetic of Imprecise Probabilities with fuzzy numbers☆14Apr 5, 2024Updated 2 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- Code related to different aspects of conformal learning☆18Jan 28, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Heterogeneity Induced Pre-Processing tOol☆19Aug 15, 2021Updated 4 years ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 7 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Constraint-based Learning with Neural Networks☆15Dec 7, 2020Updated 5 years ago
- Low-dimensional Projection of Single Cell Velocity☆29Aug 26, 2022Updated 3 years ago
- ☆16Sep 8, 2024Updated last year
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago