☆21Aug 30, 2018Updated 7 years ago
Alternatives and similar repositories for netsne
Users that are interested in netsne are comparing it to the libraries listed below
Sorting:
- ☆18Aug 14, 2017Updated 8 years ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler☆10Nov 8, 2018Updated 7 years ago
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 4 months ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- ☆18Sep 23, 2024Updated last year
- ☆37Apr 9, 2021Updated 4 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆65Apr 5, 2024Updated last year
- GrandPrix☆16May 27, 2019Updated 6 years ago
- Bioinformatics pipelines for Resolwe☆19Feb 16, 2026Updated 2 weeks ago
- Code and simulations using biologically annotated neural networks☆23Aug 23, 2021Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Visualization tool for temporal clonal evolution.☆18Mar 13, 2020Updated 5 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 7 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Dec 17, 2020Updated 5 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- Simple App to visualize single cell datasets☆20Apr 12, 2018Updated 7 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- ☆20Mar 16, 2019Updated 6 years ago
- ☆22May 6, 2022Updated 3 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52May 20, 2022Updated 3 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- ☆27Apr 15, 2025Updated 10 months ago
- ☆25Aug 20, 2024Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 5 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- R data package for annotating/converting Gene IDs☆169Jul 6, 2025Updated 7 months ago
- Collection of public scRNA-Seq datasets used by our group☆173May 4, 2021Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago