hhcho / netsne
☆21Updated 6 years ago
Alternatives and similar repositories for netsne:
Users that are interested in netsne are comparing it to the libraries listed below
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- ☆28Updated 2 years ago
- ☆19Updated 5 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Updated 6 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 6 months ago
- ☆15Updated 7 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆59Updated 4 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆46Updated 7 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 10 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆15Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- ☆28Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago