linnarsson-lab / BackSPIN

Related projects ⓘ

Alternatives and complementary repositories for BackSPIN

• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆110Updated 2 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆63Updated 4 years ago
• maggiecrow / MetaNeighbor
  ☆47Updated 6 years ago
• atarashansky / self-assembling-manifold
  The Self-Assembling-Manifold (SAM) algorithm.
  ☆41Updated 3 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆89Updated 3 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆58Updated 6 months ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆72Updated last year
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆79Updated 2 months ago
• cole-trapnell-lab / cicero-release
  ☆55Updated 2 months ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆65Updated 6 years ago
• Teichlab / cellity
  ☆35Updated 8 years ago
• markrobinsonuzh / conquer
  consistent quantification of external RNA-seq data sets
  ☆58Updated 10 months ago
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆88Updated 2 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• YosefLab / scone
  ☆53Updated 3 weeks ago
• velocyto-team / velocyto-notebooks
  ☆55Updated 6 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆43Updated 8 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆22Updated 5 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆56Updated last month
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆73Updated last year
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 3 years ago
• pachterlab / NYMP_2018
  ☆29Updated 5 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆86Updated 2 years ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆34Updated last year
• govinda-kamath / clustering_on_transcript_compatibility_counts
  Clustering cells from single cell RNA seq assays
  ☆46Updated 5 years ago
• ManchesterBioinference / Scasat
  Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
  ☆35Updated 5 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 4 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆43Updated 7 months ago