JEFworks / MUDANView external linksLinks
Multi-sample Unified Discriminant ANalysis
☆75Apr 11, 2023Updated 2 years ago
Alternatives and similar repositories for MUDAN
Users that are interested in MUDAN are comparing it to the libraries listed below
Sorting:
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆58Oct 3, 2024Updated last year
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated last year
- ☆12Jul 13, 2018Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆218Feb 26, 2024Updated last year
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆620Oct 10, 2025Updated 4 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Mar 13, 2025Updated 11 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Jul 13, 2023Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- ☆69May 2, 2018Updated 7 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆114Oct 15, 2025Updated 3 months ago
- scWGCNA☆61Nov 8, 2022Updated 3 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated 11 months ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆311Nov 1, 2022Updated 3 years ago
- RNA velocity estimation in R☆194Sep 14, 2023Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Dec 4, 2025Updated 2 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- ☆55Feb 19, 2025Updated 11 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆217Dec 18, 2025Updated last month
- Analysis code and results for dreamlet☆10Jul 18, 2025Updated 6 months ago
- Heterogeneity Induced Pre-Processing tOol☆18Aug 15, 2021Updated 4 years ago