MarioniLab / FurtherMNN2018Links
Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.
☆22Updated 6 years ago
Alternatives and similar repositories for FurtherMNN2018
Users that are interested in FurtherMNN2018 are comparing it to the libraries listed below
Sorting:
- Code for the MNN manuscript figures☆49Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- ☆46Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Publication Page for MPAL Paper 2019☆84Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- ☆63Updated 5 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- ☆59Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- ☆41Updated 7 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- ☆45Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆95Updated 7 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 4 months ago