MarioniLab / FurtherMNN2018Links
Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.
☆22Updated 5 years ago
Alternatives and similar repositories for FurtherMNN2018
Users that are interested in FurtherMNN2018 are comparing it to the libraries listed below
Sorting:
- Code for the MNN manuscript figures☆49Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆46Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆34Updated 6 years ago
- ☆59Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆45Updated last year
- ☆21Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆30Updated 5 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- ☆17Updated 6 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- ☆55Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆28Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago