JiekaiLab / SOTLinks
Single-cell Orientation Tracing
☆21Updated 3 years ago
Alternatives and similar repositories for SOT
Users that are interested in SOT are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆14Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- SCDC☆45Updated 4 months ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆38Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- single nuclei RNA-seq analysis toolbox☆10Updated 9 years ago
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- ☆50Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ☆39Updated 2 months ago
- ☆34Updated 6 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 3 years ago
- ☆17Updated 6 years ago
- ☆43Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated this week
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- Human embryonic cell altas☆13Updated 5 years ago