JiekaiLab / SOTLinks
Single-cell Orientation Tracing
☆22Updated 4 years ago
Alternatives and similar repositories for SOT
Users that are interested in SOT are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- ☆15Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- Single-cell Case Control Analysis☆52Updated last week
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 7 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆38Updated last year
- ☆17Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Human embryonic cell altas☆13Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Updated 8 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆50Updated 6 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- SCDC☆46Updated 7 months ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago