JiekaiLab / SOTLinks
Single-cell Orientation Tracing
☆21Updated 3 years ago
Alternatives and similar repositories for SOT
Users that are interested in SOT are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆14Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- ☆34Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 5 months ago
- Single-cell Case Control Analysis☆52Updated last week
- Functions for single cell data analysis☆32Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆38Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- ☆50Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆17Updated 6 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year
- SCDC☆45Updated 5 months ago
- ☆47Updated 5 years ago
- ☆39Updated 3 months ago
- Human embryonic cell altas☆13Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- ☆18Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆43Updated 4 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago