JiekaiLab / SOTLinks
Single-cell Orientation Tracing
☆21Updated 3 years ago
Alternatives and similar repositories for SOT
Users that are interested in SOT are comparing it to the libraries listed below
Sorting:
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆13Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- ☆50Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Single-cell Case Control Analysis☆52Updated this week
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- SCDC☆45Updated 2 months ago
- ☆42Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Human embryonic cell altas☆13Updated 5 years ago
- ☆18Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- ☆33Updated 6 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆24Updated 2 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year