JiekaiLab / SOTLinks
Single-cell Orientation Tracing
☆21Updated 3 years ago
Alternatives and similar repositories for SOT
Users that are interested in SOT are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆13Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆32Updated 6 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- ☆16Updated 6 years ago
- Human embryonic cell altas☆13Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- ☆18Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆34Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- ☆13Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago