DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
☆12Jul 8, 2021Updated 5 years ago
Alternatives and similar repositories for hla_pipeline
Users that are interested in hla_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆22Updated this week
- ☆20Jun 23, 2020Updated 6 years ago
- ☆11Feb 12, 2024Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Oct 16, 2026Updated 2 weeks ago
- 🏺 Exploring novel tumor epitope identification☆39Oct 7, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆24Jun 14, 2024Updated 2 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Oct 8, 2024Updated 2 years ago
- Variant sequence context analysis tool☆10Jul 5, 2024Updated 2 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Aug 19, 2026Updated 2 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High-dimensional distance metrics for scRNAseq☆12Dec 14, 2021Updated 4 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆14Jun 19, 2023Updated 3 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 3 years ago
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆16Sep 2, 2020Updated 6 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- CRUK Bioinformatics Workshop September 2017☆18Sep 21, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆40Nov 24, 2022Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆102Oct 15, 2026Updated 2 weeks ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated 2 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆32Feb 16, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Sep 30, 2024Updated 2 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆24May 7, 2024Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 4 months ago
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆25Feb 28, 2025Updated last year
- deepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene…☆13May 13, 2022Updated 4 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated 4 months ago