jfnavarro / hla_pipelineLinks
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
☆11Updated 4 years ago
Alternatives and similar repositories for hla_pipeline
Users that are interested in hla_pipeline are comparing it to the libraries listed below
Sorting:
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Whole genome workflows☆12Updated last year
- Pipeline to detect HLA disruption from WES and RNAseq data☆19Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆23Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- omics data analysis using clusterProfiler ;)☆15Updated last year
- bioinfo workflow based on snakemake☆14Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- R package for nucleotide conversion sequencing data analysis☆15Updated 8 months ago
- ☆12Updated 5 years ago
- ☆10Updated 7 months ago
- VirusScan Pipeline☆11Updated 9 months ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- ☆13Updated 8 months ago
- ☆22Updated 3 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- End-guided RNA assembler☆15Updated 2 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆12Updated 2 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Updated 3 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month