MarioniLab / scranLinks
Clone of the Bioconductor repository for the scran package.
☆44Updated last year
Alternatives and similar repositories for scran
Users that are interested in scran are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆37Updated 9 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- ☆48Updated 7 years ago
- ☆55Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Mouse cell atlas☆61Updated 5 years ago
- ☆43Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆63Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated this week
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago