MarioniLab / scranLinks
Clone of the Bioconductor repository for the scran package.
☆46Updated last year
Alternatives and similar repositories for scran
Users that are interested in scran are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- Mouse cell atlas☆61Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- ☆56Updated 5 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Normalize CITEseq Data☆67Updated 2 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- ☆48Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆37Updated 9 years ago
- ☆63Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- ☆41Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Linear trajectory inference for single-cell RNA-seq☆60Updated 2 months ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Cell type pipes for R☆52Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- ☆46Updated 2 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 5 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 2 months ago
- ☆43Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago