zdebruine / singletLinks
Single-cell analysis with non-negative matrix factorization
☆45Updated 5 months ago
Alternatives and similar repositories for singlet
Users that are interested in singlet are comparing it to the libraries listed below
Sorting:
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- A database of useful gene signatures for single-cell analysis☆27Updated 7 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- Cell type pipes for R☆52Updated last year
- Extension of SpatialExperiment with sf☆56Updated last month
- ☆27Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆28Updated 2 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- An R package for visualising cell-cell interactions☆45Updated last year
- ☆43Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Normalize CITEseq Data☆66Updated last month
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆23Updated last month
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 6 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated 4 months ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago