zdebruine / singletLinks
Single-cell analysis with non-negative matrix factorization
☆44Updated 7 months ago
Alternatives and similar repositories for singlet
Users that are interested in singlet are comparing it to the libraries listed below
Sorting:
- R package for analysing single cell data☆55Updated 2 years ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- A database of useful gene signatures for single-cell analysis☆25Updated 2 weeks ago
- Cell type pipes for R☆51Updated last year
- An R package for visualising cell-cell interactions☆44Updated 9 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Normalize CITEseq Data☆65Updated last month
- ☆41Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- R package for Flexible dot plots☆29Updated 2 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆17Updated last week
- ☆29Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- A repository of case studies using ProjecTILs☆14Updated 10 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 5 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆17Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated last year
- An R package to analyze single-cell V(D)J data☆26Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago