Alternatives and similar repositories for singlet

Users that are interested in singlet are comparing it to the libraries listed below

• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆49Updated 2 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 3 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆56Updated 2 weeks ago
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆28Updated 8 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆37Updated 2 months ago
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆15Updated 2 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆46Updated last year
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 6 months ago
• hansenlab / tricycle
  ☆27Updated 3 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆28Updated 3 months ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆59Updated 3 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 2 months ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆33Updated last month
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• cancerbits / DElegate
  Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data
  ☆21Updated last year
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 4 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆45Updated 3 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated last year
• Qile0317 / APackOfTheClones
  Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …
  ☆21Updated 4 months ago
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆18Updated 10 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆15Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago