msraredon / NICHESLinks
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
☆56Updated 3 months ago
Alternatives and similar repositories for NICHES
Users that are interested in NICHES are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆60Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- ☆41Updated 4 years ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆43Updated 6 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆76Updated 4 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 7 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- ☆50Updated 5 years ago
- R package for semi-supervised single-cell data integration☆88Updated 2 weeks ago
- Construct Tumor Transition Zone Microenvironment☆48Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated last month
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆50Updated 7 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆58Updated 2 months ago
- ☆35Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year