msraredon / NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
☆52Updated 6 months ago
Alternatives and similar repositories for NICHES:
Users that are interested in NICHES are comparing it to the libraries listed below
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆63Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆59Updated 5 years ago
- Single Cell Analysis Operations☆13Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- Multi-resolution Variational Inference☆22Updated last week
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆54Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- ☆40Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 10 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆42Updated 4 months ago
- R package for semi-supervised single-cell data integration☆81Updated 2 weeks ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆41Updated last month
- Accurate and fast cell marker gene identification with COSG☆44Updated 2 weeks ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year