Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
☆127Apr 16, 2025Updated last year
Alternatives and similar repositories for clustifyr
Users that are interested in clustifyr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆314Jun 17, 2025Updated last year
- Automated cell type classification☆116Jan 3, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-sample multi-group scRNA-seq analysis tools☆242Jul 6, 2026Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆231Jul 2, 2026Updated 2 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 9 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆343Nov 1, 2022Updated 3 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆185Jun 10, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆324Dec 19, 2025Updated 9 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆349Apr 23, 2024Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆246May 8, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R client for the OmniPath web service☆173Sep 9, 2026Updated last week
- Fast Gene Set Enrichment Analysis☆459Jun 27, 2026Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆204Mar 9, 2024Updated 2 years ago
- ☆184May 4, 2026Updated 4 months ago
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated last month
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 3 years ago
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆97Apr 18, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆565Mar 21, 2025Updated last year
- Fast Wilcoxon and auROC☆218Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆268Jan 10, 2026Updated 8 months ago
- ☆363Dec 9, 2021Updated 4 years ago
- NicheNet: predict active ligand-target links between interacting cells☆679Jun 1, 2026Updated 3 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆672Jun 5, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆307Dec 16, 2025Updated 9 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 6 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 2 weeks ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆49Jul 20, 2022Updated 4 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆410Jun 26, 2026Updated 2 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago