rnabioco / clustifyrLinks
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
☆124Updated 5 months ago
Alternatives and similar repositories for clustifyr
Users that are interested in clustifyr are comparing it to the libraries listed below
Sorting:
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆105Updated 2 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆127Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆72Updated last year
- ☆73Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 3 months ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆111Updated 3 weeks ago
- An R interface to enrichR☆92Updated 8 months ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 10 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- Latent Embedding Multivariate Regression☆94Updated 10 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆123Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆55Updated 4 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- ☆58Updated last year
- Linear trajectory inference for single-cell RNA-seq☆61Updated last year
- R package for semi-supervised single-cell data integration☆90Updated last month
- Tools for single-cell data processing☆127Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- ☆47Updated 3 years ago