Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
☆125Apr 16, 2025Updated last year
Alternatives and similar repositories for clustifyr
Users that are interested in clustifyr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- Automated cell type classification☆116Jan 3, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆229Jul 2, 2026Updated 2 weeks ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 7 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆243May 8, 2023Updated 3 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R client for the OmniPath web service☆170Apr 29, 2026Updated 2 months ago
- Fast Gene Set Enrichment Analysis☆451Jun 27, 2026Updated 3 weeks ago
- AUCell: score single cells with gene regulatory networks☆199Mar 9, 2024Updated 2 years ago
- ☆185May 4, 2026Updated 2 months ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆103Apr 16, 2026Updated 3 months ago
- Hierarchical Cell Annotation☆31Nov 17, 2024Updated last year
- SingleCellNet: classify single cells across species and platforms☆142Aug 21, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆97Apr 18, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Fast Wilcoxon and auROC☆214May 5, 2026Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 6 months ago
- ☆364Dec 9, 2021Updated 4 years ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- R package to infer biological activities from omics data using a collection of methods.☆301Dec 16, 2025Updated 7 months ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆50Jul 20, 2022Updated 4 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago