Latent Embedding Multivariate Regression
☆100Feb 18, 2026Updated last week
Alternatives and similar repositories for lemur
Users that are interested in lemur are comparing it to the libraries listed below
Sorting:
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆120Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆77Nov 11, 2025Updated 3 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- ☆60Apr 5, 2024Updated last year
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆11Jan 25, 2026Updated last month
- Scaling Single Cell Analysis to Millions of Cells☆262Jan 13, 2026Updated last month
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 2 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 3 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆120Mar 17, 2025Updated 11 months ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 10 months ago
- Conversion between scRNA-seq objects☆200Jan 12, 2026Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆24Sep 19, 2025Updated 5 months ago
- ☆13Dec 14, 2023Updated 2 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated last year
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 2 weeks ago
- Significance analysis for clustering single-cell RNA-sequencing data☆123Sep 7, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 10 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆155Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆66Feb 11, 2026Updated 2 weeks ago
- ☆13Jan 16, 2019Updated 7 years ago
- ☆63Sep 13, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 6 months ago
- Multi-resolution Variational Inference☆22Updated this week
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Single cell omics biology annotations☆54Apr 20, 2025Updated 10 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- CAST package☆42Oct 26, 2024Updated last year
- scPred package for cell type prediction from scRNA-seq data☆98Jan 18, 2024Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated last month