const-ae / lemurLinks
Latent Embedding Multivariate Regression
☆97Updated last year
Alternatives and similar repositories for lemur
Users that are interested in lemur are comparing it to the libraries listed below
Sorting:
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 3 weeks ago
- Cell type pipes for R☆52Updated last year
- From geospatial to spatial -omics☆99Updated this week
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- AnnData interoperability in R☆130Updated this week
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 11 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆115Updated last week
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Normalize CITEseq Data☆66Updated 3 weeks ago
- R package for single cell and other data analysis using diffusion maps☆91Updated 3 weeks ago
- ☆44Updated last week
- Finding gene expression states in scRNA-seq data☆51Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- Pan-Cancer Single Cell Classifier☆81Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 7 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Various utility functions for Seurat single-cell analysis☆55Updated this week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- ☆41Updated 4 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆38Updated last week
- Tools for single-cell data processing☆128Updated last year