Latent Embedding Multivariate Regression
☆101May 14, 2026Updated last week
Alternatives and similar repositories for lemur
Users that are interested in lemur are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆125May 11, 2026Updated last week
- Framework for sensitive DE testing (using neighbourhoods)☆77Nov 11, 2025Updated 6 months ago
- ☆62Apr 5, 2024Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 3 months ago
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 2 weeks ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆283May 12, 2026Updated last week
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Apr 29, 2026Updated 3 weeks ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆122Mar 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Toolbox for the processing and analysis of MALDI-MSI data☆15Sep 10, 2025Updated 8 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆126Sep 7, 2024Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 9 months ago
- Multi-resolution Variational Inference☆23Apr 27, 2026Updated 3 weeks ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆49May 14, 2025Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆65Sep 13, 2024Updated last year
- ☆46Feb 13, 2026Updated 3 months ago
- ☆14Jan 16, 2019Updated 7 years ago
- ☆17Jun 15, 2023Updated 2 years ago
- scPred package for cell type prediction from scRNA-seq data☆102Jan 18, 2024Updated 2 years ago