haowenz / chromapLinks
Fast alignment and preprocessing of chromatin profiles
☆207Updated 2 months ago
Alternatives and similar repositories for chromap
Users that are interested in chromap are comparing it to the libraries listed below
Sorting:
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆175Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆246Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- ☆155Updated 6 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆154Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆195Updated last week
- A modular Hi-C mapping pipeline☆100Updated last year
- FAN-C: Framework for the ANalysis of C-like data☆120Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆174Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- Detecting sites of genomic enrichment☆197Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆156Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆270Updated last month
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆258Updated 4 months ago
- ☆156Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆119Updated last month
- Analysis of Chromosome Conformation Capture data (Hi-C)☆102Updated 2 weeks ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago
- ☆107Updated last week
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆155Updated last year
- Detection of m6A from direct RNA-Seq data☆129Updated 6 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆244Updated last week
- The tools for your .cool's☆157Updated 5 months ago