manisa / ClassifyTELinks
☆15Updated 3 years ago
Alternatives and similar repositories for ClassifyTE
Users that are interested in ClassifyTE are comparing it to the libraries listed below
Sorting:
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Study of TE evolution in a population of genomes☆10Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- ☆29Updated 2 years ago
- ☆15Updated 4 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- ☆27Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 4 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆14Updated 3 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 3 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated last week
- plot genome alignment synteny☆21Updated 5 years ago
- ☆16Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- ☆29Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆27Updated 5 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated 6 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆24Updated 3 weeks ago
- Domain based annotation of transposable elements☆21Updated 4 months ago
- Whole Genome Annotation Pipeline☆16Updated 7 months ago