☆15Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for ClassifyTE
Users that are interested in ClassifyTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆25Oct 15, 2026Updated 2 weeks ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Apr 3, 2023Updated 3 years ago
- Transposon classification tools RFSB, part of TransposonUltimate☆14Mar 27, 2024Updated 2 years ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Study of TE evolution in a population of genomes☆12Dec 11, 2023Updated 2 years ago
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- HiCAT new project☆11Nov 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆41Oct 17, 2026Updated 2 weeks ago
- A parallel wrapper for LTR_FINDER☆57Mar 8, 2026Updated 7 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- ☆11Nov 18, 2021Updated 4 years ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 6 months ago
- ☆10Apr 17, 2021Updated 5 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 2 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated last year
- ☆11Jan 13, 2021Updated 5 years ago
- FunctionaL Omics Processing platform☆12Jul 25, 2024Updated 2 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 3 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago