manisa / ClassifyTE
☆12Updated last year
Alternatives and similar repositories for ClassifyTE:
Users that are interested in ClassifyTE are comparing it to the libraries listed below
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- Simple tools for working with Hi-C data☆16Updated 5 years ago
- ☆22Updated this week
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆15Updated 2 months ago
- Yet another Hi-C scaffolding tool☆19Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated 8 months ago
- ☆16Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 9 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 7 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆15Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆24Updated 2 years ago
- ☆19Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- An R package to infer and analyze synteny networks from protein sequences☆24Updated 2 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 5 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆19Updated 6 months ago
- ☆14Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 4 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 7 months ago
- parallelLastz: Running Lastz in parallel☆15Updated 3 months ago
- ☆22Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆22Updated last month
- SINE annotation tool for plant genomes☆18Updated 10 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆15Updated last year