manisa / ClassifyTELinks
☆15Updated 2 years ago
Alternatives and similar repositories for ClassifyTE
Users that are interested in ClassifyTE are comparing it to the libraries listed below
Sorting:
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆31Updated 5 months ago
- ☆24Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- ☆28Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated last week
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- ☆16Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 6 months ago
- ☆15Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 2 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- ☆27Updated 2 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Gene Family Annotation Workflow☆11Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆35Updated last month
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆20Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- ☆29Updated 7 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆22Updated last month