bioinfolabmu / GenericRepeatFinderLinks
☆36Updated 2 years ago
Alternatives and similar repositories for GenericRepeatFinder
Users that are interested in GenericRepeatFinder are comparing it to the libraries listed below
Sorting:
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- Genome Annotation Pipeline☆36Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆38Updated 6 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆32Updated 4 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 5 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆37Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- finshingTool☆54Updated 8 years ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆42Updated 4 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆20Updated 5 years ago
- TGS scaffolding☆46Updated 3 years ago
- A program for assessing the T2T genome continuity☆83Updated last week
- Identification of transposable element families from pangenome polymorphisms☆53Updated 3 months ago
- ☆52Updated 2 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆25Updated 4 years ago