bioinfolabmu / GenericRepeatFinderLinks
☆35Updated 2 years ago
Alternatives and similar repositories for GenericRepeatFinder
Users that are interested in GenericRepeatFinder are comparing it to the libraries listed below
Sorting:
- TGS scaffolding☆46Updated 3 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- finshingTool☆54Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Noise-Cancelling Repeat Finder☆25Updated 2 years ago
- ☆44Updated 8 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- ☆76Updated 5 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- ☆26Updated 4 months ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 3 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- ☆32Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- ☆41Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 8 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- ☆63Updated last week
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Organelle Genome Assembler☆9Updated 3 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago