dwinter / repeatRLinks
read and analyse RepeatMasker output
☆27Updated 2 years ago
Alternatives and similar repositories for repeatR
Users that are interested in repeatR are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆28Updated last week
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 3 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆26Updated 9 months ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 3 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆43Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- ☆31Updated 10 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- ☆24Updated last week
- ☆21Updated 6 years ago
- ☆29Updated 2 years ago