dwinter / repeatRLinks
read and analyse RepeatMasker output
☆24Updated 2 years ago
Alternatives and similar repositories for repeatR
Users that are interested in repeatR are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- ☆42Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆37Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆26Updated 4 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- ☆32Updated 4 years ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆21Updated 5 years ago
- ☆30Updated 6 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago