read and analyse RepeatMasker output
☆27May 22, 2023Updated 3 years ago
Alternatives and similar repositories for repeatR
Users that are interested in repeatR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Analysis of transposable elements☆14Aug 19, 2026Updated last week
- ☆17May 30, 2022Updated 4 years ago
- Transposable Elements Representation Learner (TERL)☆19Jun 2, 2025Updated last year
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Neural network classification of TE☆102Apr 3, 2026Updated 4 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Aug 5, 2026Updated 3 weeks ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆21Jun 10, 2025Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 6 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- ☆11Aug 19, 2026Updated last week
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆42Jun 3, 2025Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 2 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆26Aug 14, 2026Updated 2 weeks ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Structural Variants ANnotator (SVAN)☆18Jun 27, 2026Updated 2 months ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 4 months ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- defusion☆14Aug 24, 2021Updated 5 years ago
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated last month
- ☆15Jul 21, 2022Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆83Apr 30, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆15Jan 29, 2024Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆127Apr 17, 2026Updated 4 months ago
- Extensive de-novo TE Annotator☆469Jul 16, 2026Updated last month
- Automated pipeline for enrichment analysis in non-model organisms !☆16Feb 8, 2026Updated 6 months ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆32Apr 23, 2023Updated 3 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Updated this week
- A parallel wrapper for LTR_FINDER☆57Mar 8, 2026Updated 5 months ago