read and analyse RepeatMasker output
☆27May 22, 2023Updated 2 years ago
Alternatives and similar repositories for repeatR
Users that are interested in repeatR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- ☆17May 30, 2022Updated 3 years ago
- Transposable Elements Representation Learner (TERL)☆19Jun 2, 2025Updated 11 months ago
- Structural Variants ANnotator (SVAN)☆16Mar 17, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis of transposable elements☆13Apr 27, 2026Updated 3 weeks ago
- Neural network classification of TE☆99Apr 3, 2026Updated last month
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 3 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆45May 6, 2026Updated 2 weeks ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 11 months ago
- ☆10Jan 29, 2020Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- ☆10May 7, 2026Updated last week
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆26Jan 26, 2026Updated 3 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆37Oct 17, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆27Apr 16, 2026Updated last month
- De novo annotation of young retrotransposons☆47Apr 24, 2026Updated 3 weeks ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 10 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 7 months ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jul 21, 2022Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆81Apr 30, 2021Updated 5 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆124Apr 17, 2026Updated last month
- Extensive de-novo TE Annotator☆446May 12, 2026Updated last week
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 3 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 months ago
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated 2 months ago