dwinter / repeatRLinks
read and analyse RepeatMasker output
☆27Updated 2 years ago
Alternatives and similar repositories for repeatR
Users that are interested in repeatR are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 6 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- ☆44Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- ☆32Updated last year
- ☆29Updated 3 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Updated last week
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Snakemake pipeline to analyze transposable element 'omics data.☆30Updated 2 weeks ago
- ☆44Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆45Updated this week
- ☆27Updated 11 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Genome Annotation Pipeline☆42Updated last year
- De novo annotation of young retrotransposons☆47Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- ☆16Updated 6 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago