oushujun / LTR_FINDER_parallelLinks
A parallel wrapper for LTR_FINDER
☆52Updated 3 months ago
Alternatives and similar repositories for LTR_FINDER_parallel
Users that are interested in LTR_FINDER_parallel are comparing it to the libraries listed below
Sorting:
- Neural network classification of TE☆90Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆63Updated 6 months ago
- A novel genome assembly pipeline based on deep learning☆62Updated 7 months ago
- A program to call variants from genome alignment☆81Updated 2 months ago
- DNA序列比对结果 可视化展示工具☆52Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆100Updated this week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆51Updated 5 years ago
- NLR-Annotator upload☆68Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆77Updated 5 years ago
- ☆40Updated 2 years ago
- Genome annotation pipeline☆59Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 6 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- ☆80Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆62Updated 3 months ago
- ☆44Updated 8 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- RepeatIdentifier☆66Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆31Updated last year
- ☆34Updated 10 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆62Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago