A parallel wrapper for LTR_FINDER
☆55Mar 8, 2026Updated 2 weeks ago
Alternatives and similar repositories for LTR_FINDER_parallel
Users that are interested in LTR_FINDER_parallel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated 2 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆107Nov 17, 2025Updated 4 months ago
- ☆18Jun 21, 2022Updated 3 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆435Mar 12, 2026Updated last week
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- ☆40Jun 19, 2023Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- Synteny and Rearrangement Identifier☆454Updated this week
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated 2 months ago
- PASA software☆199Feb 12, 2025Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 7 years ago
- De-Novo Repeat Discovery Tool☆233Jul 21, 2025Updated 8 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- GenomeTools genome analysis system.☆335Nov 10, 2025Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆164Mar 16, 2026Updated last week
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated last year
- ☆14Jul 27, 2019Updated 6 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago