Alternatives and similar repositories for LTR_FINDER_parallel:

Users that are interested in LTR_FINDER_parallel are comparing it to the libraries listed below

• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆46Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆59Updated 3 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆66Updated 3 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆62Updated 4 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 2 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆47Updated 2 years ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆57Updated last year
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆29Updated last year
• DessimozLab / OMArk
  ☆71Updated last month
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆65Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated last year
• liangclab / HERA
  ☆76Updated 5 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆79Updated last year
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆27Updated 3 months ago
• daewoooo / SVbyEye
  ☆87Updated last month
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆24Updated 4 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 8 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆33Updated 3 years ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆62Updated 10 months ago
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆74Updated 5 months ago