Alternatives and similar repositories for scprep

Users that are interested in scprep are comparing it to the libraries listed below

• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆74Updated 3 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆177Updated 2 years ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆77Updated last week
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆78Updated last year
• broadinstitute / wot
  A software package for analyzing snapshots of developmental processes
  ☆153Updated 3 years ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• bioFAM / slalom
  ☆29Updated 3 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆151Updated 11 months ago
• rajewsky-lab / novosparc
  ☆131Updated 2 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆98Updated 6 years ago
• theislab / paga
  Mapping out the coarse-grained connectivity structures of complex manifolds.
  ☆232Updated 5 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆73Updated last year
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆57Updated 7 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated last year
• saezlab / dorothea-py
  Dorothea package in Python
  ☆11Updated 3 years ago
• stanleyn / Comp790-166-Comp-Bio
  Computational Biology- Spring 2021
  ☆48Updated 4 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆111Updated 2 months ago