KrishnaswamyLab / scprepLinks
A collection of scripts and tools for loading, processing, and handling single cell data.
☆74Updated last month
Alternatives and similar repositories for scprep
Users that are interested in scprep are comparing it to the libraries listed below
Sorting:
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 11 months ago
- ☆102Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Geometry-preserving random sampling☆89Updated 10 months ago
- data and model repository for single-cell data☆135Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Batch balanced KNN☆170Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 7 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 8 months ago
- Multi-omics studies are available here☆52Updated 3 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- spatial transcriptome, single cell☆69Updated 2 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆74Updated 2 years ago
- ☆29Updated 2 years ago
- Population balance analysis☆44Updated 6 years ago
- ☆131Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- A software package for analyzing snapshots of developmental processes☆146Updated 3 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆225Updated 5 years ago
- ☆48Updated 6 years ago
- ☆55Updated 3 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Python client for the OmniPath web service☆46Updated 2 months ago
- ☆45Updated last month
- Conditional out-of-distribution prediction☆63Updated last year