Alternatives and similar repositories for netNMF-sc

Users that are interested in netNMF-sc are comparing it to the libraries listed below

• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• seasamgo / rescue
  Bootstrap imputation for scRNAseq data
  ☆12Updated 4 years ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 4 years ago
• mhu10 / scPanoView
  ☆11Updated 5 years ago
• KlugerLab / ALRA-paper
  ☆9Updated 3 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 8 months ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆15Updated 4 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• chenlingantelope / HarmonizationSCANVI
  Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
  ☆13Updated 2 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• audreyqyfu / LATE
  Imputation of single cell RNA-sequencing data with autoencoder
  ☆16Updated 4 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• debsin / dropClust
  Version 2.1.0 released
  ☆23Updated 5 years ago
• yycunc / SAFEclustering
  SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆17Updated 4 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated 11 months ago
• jingshuw / descend
  ☆16Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 3 years ago
• mukamel-lab / SingleCellFusion
  SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
  ☆12Updated 3 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• simslab / cluster_diffex2018
  scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
  ☆21Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago