netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
☆24Apr 19, 2021Updated 5 years ago
Alternatives and similar repositories for netNMF-sc
Users that are interested in netNMF-sc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for data and figure generation in SAVER paper☆19Jan 5, 2021Updated 5 years ago
- ☆10Oct 31, 2021Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆82Dec 14, 2023Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 7 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆91Jan 31, 2022Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- covolutional neural network based coexpression analysis☆79Jun 13, 2020Updated 6 years ago
- ☆18Jun 6, 2022Updated 4 years ago
- ☆88Jul 13, 2020Updated 6 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- ☆19Oct 27, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deep learning for single-cell transcript counts☆91Mar 14, 2025Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 5 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆249May 23, 2020Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- ☆10Aug 12, 2018Updated 8 years ago
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆48Jun 21, 2019Updated 7 years ago
- Integrating zingeR with ZINB-WaVE weights☆27Feb 15, 2018Updated 8 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 3 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
- ☆40May 10, 2026Updated 5 months ago