brianhie / geosketchView external linksLinks
Geometry-preserving random sampling
☆96Oct 29, 2024Updated last year
Alternatives and similar repositories for geosketch
Users that are interested in geosketch are comparing it to the libraries listed below
Sorting:
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 7 months ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Exploring dimension-reduced embeddings☆111Jul 6, 2022Updated 3 years ago
- ☆18Aug 14, 2017Updated 8 years ago
- Reference mapping for single-cell genomics☆398Dec 2, 2025Updated 2 months ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆234May 23, 2020Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆427Updated this week
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆425Feb 4, 2026Updated last week
- scover☆24Nov 3, 2023Updated 2 years ago
- ☆20May 20, 2021Updated 4 years ago
- ☆359Dec 9, 2021Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Jan 26, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆621Oct 10, 2025Updated 4 months ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Feb 8, 2019Updated 7 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Nov 2, 2025Updated 3 months ago
- Convert between AnnData and SingleCellExperiment☆143Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Dec 11, 2025Updated 2 months ago
- Clustering scRNAseq by genotypes☆193Nov 11, 2025Updated 3 months ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆107Oct 27, 2023Updated 2 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- ☆11May 30, 2023Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆113Sep 27, 2024Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆414Sep 4, 2025Updated 5 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Benchmarking analysis of data integration tools☆406Sep 17, 2025Updated 4 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆210Jan 9, 2023Updated 3 years ago
- ☆62May 21, 2025Updated 8 months ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- ☆59Apr 28, 2020Updated 5 years ago