brianhie / geosketchLinks
Geometry-preserving random sampling
☆87Updated 7 months ago
Alternatives and similar repositories for geosketch
Users that are interested in geosketch are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 10 months ago
- pseudobulking on an AnnData object☆32Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆107Updated 8 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- ☆54Updated last month
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆50Updated 11 months ago
- ☆53Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆81Updated 3 weeks ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 5 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆43Updated 7 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆118Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 9 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- ☆55Updated 7 years ago
- ☆35Updated 3 months ago
- ☆44Updated this week
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 6 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆60Updated last year
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆20Updated 6 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆87Updated 11 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago