Comparison of single cell normalization strategies
☆10Aug 13, 2021Updated 4 years ago
Alternatives and similar repositories for NormalizeSingleCell
Users that are interested in NormalizeSingleCell are comparing it to the libraries listed below
Sorting:
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 6 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 3 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆29Jan 5, 2026Updated last month
- ☆11Jun 10, 2024Updated last year
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- ☆12May 4, 2022Updated 3 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Compilation of R heatmap functions.☆14Oct 12, 2021Updated 4 years ago
- ☆16Jul 9, 2024Updated last year
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- ☆21Mar 20, 2017Updated 8 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 4 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Mar 7, 2020Updated 5 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- ☆17May 15, 2024Updated last year
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 3 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- Functional enrichment analysis of high-throughput omics data☆20Jan 6, 2025Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆41Nov 13, 2023Updated 2 years ago
- ☆50Jan 16, 2020Updated 6 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 5 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ☆23Jul 18, 2019Updated 6 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Jul 2, 2025Updated 8 months ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Mar 11, 2025Updated 11 months ago
- ☆19Jun 13, 2019Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 8 months ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆31Jul 29, 2023Updated 2 years ago