NikolayOskolkov / NormalizeSingleCell
Comparison of single cell normalization strategies
☆10Updated 3 years ago
Alternatives and similar repositories for NormalizeSingleCell:
Users that are interested in NormalizeSingleCell are comparing it to the libraries listed below
- ☆12Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated 3 months ago
- ☆26Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- ☆12Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 11 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- ☆9Updated last year
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago