NikolayOskolkov / NormalizeSingleCellLinks
Comparison of single cell normalization strategies
☆10Updated 4 years ago
Alternatives and similar repositories for NormalizeSingleCell
Users that are interested in NormalizeSingleCell are comparing it to the libraries listed below
Sorting:
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- ☆38Updated 2 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- ☆12Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 6 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆29Updated 2 years ago
- ☆28Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 2 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- RNA velocity validation☆22Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- CiteFuse:☆28Updated 2 years ago