PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
☆552Mar 4, 2026Updated 3 months ago
Alternatives and similar repositories for PHATE
Users that are interested in PHATE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆382Oct 3, 2024Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 8 months ago
- PHATE dimensionality reduction method implemented in R☆84Feb 11, 2021Updated 5 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆58Sep 27, 2024Updated last year
- Quantifying experimental perturbations at single cell resolution☆114Sep 27, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- ☆101Oct 1, 2024Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,638Updated this week
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,489Updated this week
- RNA Velocity generalized through dynamical modeling☆504Feb 25, 2026Updated 3 months ago
- ☆364Dec 9, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆501Apr 23, 2026Updated last month
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆227Apr 26, 2026Updated last month
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 4 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,568Dec 11, 2022Updated 3 years ago
- Multi-Omics Factor Analysis☆267Sep 30, 2020Updated 5 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,748Jun 6, 2026Updated last week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆614Jun 26, 2025Updated 11 months ago
- Deep count autoencoder for denoising scRNA-seq data☆274Mar 21, 2024Updated 2 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆674Nov 14, 2025Updated 7 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆297Jun 17, 2025Updated 11 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Tools for building and manipulating graphs in Python☆46Dec 18, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆331Nov 1, 2022Updated 3 years ago
- Single cell trajectory detection☆316Apr 21, 2026Updated last month
- An interactive explorer for single-cell transcriptomics data☆775Updated this week
- ☆454May 26, 2026Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆462Apr 30, 2026Updated last month
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 7 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆265Jan 10, 2026Updated 5 months ago