☆101Oct 1, 2024Updated last year
Alternatives and similar repositories for SAUCIE
Users that are interested in SAUCIE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantifying experimental perturbations at single cell resolution☆115Sep 27, 2024Updated last year
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Jun 25, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 9 months ago
- ☆56Apr 6, 2020Updated 6 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Python package for dimension reduction of high-dimensional biological data.☆16May 23, 2018Updated 8 years ago
- PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.☆555Mar 4, 2026Updated 3 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆384Oct 3, 2024Updated last year
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆53Jun 6, 2025Updated last year
- ☆19Dec 1, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- ☆29Feb 1, 2023Updated 3 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Mar 30, 2021Updated 5 years ago
- ☆47Jun 21, 2019Updated 7 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆18May 27, 2020Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆116Nov 28, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 5 months ago
- Discrete Distributional Differential Expression☆23Jan 3, 2019Updated 7 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆433Jun 3, 2026Updated 3 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 8 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Reference mapping for single-cell genomics☆406Updated this week
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27Sep 2, 2021Updated 4 years ago
- Deep count autoencoder for denoising scRNA-seq data☆274Mar 21, 2024Updated 2 years ago
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆23Jun 14, 2022Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆176Jan 26, 2024Updated 2 years ago
- ☆19Feb 9, 2022Updated 4 years ago