Alternatives and similar repositories for ALRA

Users that are interested in ALRA are comparing it to the libraries listed below

• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆86Updated 2 months ago
• wycwycpku / RSCORE
  ☆26Updated 3 years ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• cellgeni / batchbench
  ☆47Updated 3 years ago
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆43Updated 11 months ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 8 months ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆73Updated 3 weeks ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 11 months ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆30Updated 4 years ago
• lhe17 / nebula
  ☆41Updated 2 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆84Updated 8 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 11 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆61Updated 7 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆121Updated last month
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 4 months ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• krasnowlab / HLCA
  ☆60Updated 4 years ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆48Updated 9 months ago
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated last week
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆20Updated 4 months ago