KlugerLab / ALRA
Imputation method for scRNA-seq based on low-rank approximation
☆73Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for ALRA
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆25Updated 5 years ago
- ☆47Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆54Updated 7 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- scWGCNA☆55Updated 2 years ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- ☆58Updated 5 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- ☆32Updated 2 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated last week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆56Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆87Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆89Updated 4 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- Publication Page for MPAL Paper 2019☆77Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- Tools used in Human Cell Landscape(HCL)☆52Updated 4 years ago
- ☆48Updated 4 months ago