AllonMKlein / scrubletLinks
Detect doublets in single-cell RNA-seq data
☆86Updated 6 years ago
Alternatives and similar repositories for scrublet
Users that are interested in scrublet are comparing it to the libraries listed below
Sorting:
- Doublet detection in single-cell RNA-seq data.☆93Updated 8 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆93Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Tools for single-cell data processing☆127Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆73Updated 2 years ago
- ☆70Updated last year
- Java tools for analyzing Drop-seq data☆130Updated 2 weeks ago
- Automated cell type classification☆112Updated 9 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated last month
- ☆69Updated 7 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆130Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- AUCell: score single cells with gene regulatory networks☆171Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆124Updated 4 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆195Updated this week
- Clustering scRNAseq by genotypes☆189Updated 11 months ago
- Metacell - Single-cell mRNA Analysis☆117Updated 9 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago