AllonMKlein / scrubletLinks
Detect doublets in single-cell RNA-seq data
☆86Updated 6 years ago
Alternatives and similar repositories for scrublet
Users that are interested in scrublet are comparing it to the libraries listed below
Sorting:
- Doublet detection in single-cell RNA-seq data.☆96Updated 9 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Tools for single-cell data processing☆128Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- ☆71Updated last year
- ☆74Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆69Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- Genetic multiplexing of barcoded single cell RNA-seq☆131Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Java tools for analyzing Drop-seq data☆130Updated 3 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆139Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago
- Automated cell type classification☆114Updated 11 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- ☆112Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago