Detect doublets in single-cell RNA-seq data
☆86Jul 3, 2019Updated 6 years ago
Alternatives and similar repositories for scrublet
Users that are interested in scrublet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆331Nov 1, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- software to detect doublets☆98Dec 28, 2024Updated last year
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆77Sep 2, 2021Updated 4 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 4 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- RNA Velocity generalized through dynamical modeling☆504Feb 25, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Explore and share your scRNAseq clustering results☆52Sep 6, 2023Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 6 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆19Mar 16, 2020Updated 6 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Jun 5, 2026Updated last week
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆227Apr 26, 2026Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆175Jan 26, 2024Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 8 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆152Feb 13, 2025Updated last year
- Fast visualization tool for large-scale and high dimensional single-cell data☆79Dec 16, 2025Updated 5 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆265Jan 10, 2026Updated 5 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆177Dec 29, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆614Jun 26, 2025Updated 11 months ago
- ☆57May 22, 2018Updated 8 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,489Updated this week
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆198Jan 13, 2026Updated 5 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 11 months ago