Alternatives and similar repositories for scrublet:

Users that are interested in scrublet are comparing it to the libraries listed below

• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆61Updated last year
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆90Updated 2 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆66Updated 5 years ago
• rpolicastro / scProportionTest
  ☆60Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆79Updated 6 months ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆92Updated 4 years ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆89Updated 2 weeks ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 8 months ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆76Updated 2 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆87Updated 3 years ago
• cellgeni / batchbench
  ☆47Updated 2 years ago
• AllonKleinLab / SPRING_dev
  ☆67Updated 9 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆108Updated 4 months ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• AllonKleinLab / SPRING
  ☆67Updated 6 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆97Updated last year
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• TheHumphreysLab / plot1cell
  ☆98Updated last year
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆162Updated 6 months ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆57Updated last year
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆105Updated 3 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆63Updated 6 months ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆69Updated last year
• AllonKleinLab / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆35Updated 5 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆95Updated this week
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆71Updated 4 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆70Updated 3 years ago