Alternatives and similar repositories for pseudodynamics

Users that are interested in pseudodynamics are comparing it to the libraries listed below

• lcmmichielsen / scHPL
  ☆37Updated 10 months ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆53Updated last month
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 3 years ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated 2 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated 2 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆60Updated 3 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 7 months ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆53Updated 5 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆48Updated 5 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• heiniglab / scPower
  Experimental design framework for scRNAseq population studies (eQTL and DE)
  ☆46Updated last year
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆44Updated 5 years ago