SGDDNB / hrpiLinks
Rmarkdown / compiled html files for human reprogramming dataset analysis
☆18Updated 4 years ago
Alternatives and similar repositories for hrpi
Users that are interested in hrpi are comparing it to the libraries listed below
Sorting:
- ☆13Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆32Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆27Updated 3 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- ☆16Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆20Updated last year
- simpler single cell RNAseq data clustering☆40Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆34Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year