KrishnaswamyLab / MELDLinks
Quantifying experimental perturbations at single cell resolution
☆112Updated last year
Alternatives and similar repositories for MELD
Users that are interested in MELD are comparing it to the libraries listed below
Sorting:
- spatial transcriptome, single cell☆73Updated 2 years ago
- ☆101Updated 2 years ago
- data and model repository for single-cell data☆136Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 11 months ago
- ☆45Updated 5 months ago
- ☆59Updated 7 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Geometry-preserving random sampling☆95Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Batch balanced KNN☆176Updated 2 years ago
- ☆131Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Multimodal Data (.h5mu) implementation for Python☆104Updated 2 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆48Updated 6 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆56Updated last week
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆46Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 6 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Conditional out-of-distribution prediction☆61Updated last year