theislab / scibLinks
Benchmarking analysis of data integration tools
☆395Updated 2 months ago
Alternatives and similar repositories for scib
Users that are interested in scib are comparing it to the libraries listed below
Sorting:
- Reference mapping for single-cell genomics☆393Updated this week
- This is the alpha version of the CellOracle package☆401Updated 10 months ago
- Scanpy Tutorials.☆229Updated this week
- A tool for semi-automatic cell type classification☆431Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆247Updated last week
- A package to help convert different single-cell data formats to each other☆448Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆394Updated 3 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆393Updated 3 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆227Updated 5 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆447Updated 5 months ago
- CellRank: dynamics from multi-view single-cell data☆409Updated 3 weeks ago
- Single-cell perturbation analysis☆217Updated last week
- Python package to perform enrichment analysis from omics data.☆241Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆412Updated last week
- tools and notes for spatial omics☆330Updated 9 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆366Updated 4 months ago
- Panoramic stitching of single cell data☆294Updated 4 months ago
- Single-cell epigenomics analysis tools☆301Updated last week
- RNA Velocity generalized through dynamical modeling☆475Updated 3 weeks ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆242Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆562Updated 5 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆415Updated 4 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆235Updated last month
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated last week
- ☆359Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆239Updated 10 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 5 years ago
- muon is a multimodal omics Python framework☆257Updated 3 weeks ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆438Updated 3 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆205Updated last month