theislab / scibLinks
Benchmarking analysis of data integration tools
☆373Updated 7 months ago
Alternatives and similar repositories for scib
Users that are interested in scib are comparing it to the libraries listed below
Sorting:
- Reference mapping for single-cell genomics☆381Updated last month
- This is the alpha version of the CellOracle package☆373Updated 7 months ago
- Scanpy Tutorials.☆219Updated last week
- A tool for semi-automatic cell type classification☆397Updated 2 weeks ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆213Updated last month
- LIANA+: an all-in-one framework for cell-cell communication☆227Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆361Updated 5 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆373Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆393Updated 4 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆383Updated last week
- Panoramic stitching of single cell data☆286Updated last month
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆419Updated 2 months ago
- A package to help convert different single-cell data formats to each other☆435Updated last year
- RNA Velocity generalized through dynamical modeling☆458Updated 6 months ago
- Python package to perform enrichment analysis from omics data.☆218Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆353Updated 3 weeks ago
- Single-cell perturbation analysis☆196Updated this week
- Comparison of methods for trajectory inference on single-cell data 🥇☆213Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.☆238Updated this week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆226Updated last month
- Single-cell epigenomics analysis tools☆283Updated 2 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆391Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆559Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆531Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆202Updated 5 months ago
- ☆356Updated 3 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆421Updated 2 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆232Updated 7 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆289Updated 2 weeks ago