Single-Cell Sequencing Quality Control and Processing Software
☆31Sep 16, 2019Updated 7 years ago
Alternatives and similar repositories for seqc
Users that are interested in seqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Mar 7, 2018Updated 8 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆16Jan 3, 2023Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Oct 22, 2020Updated 6 years ago
- Secretory Pathway Reconstruction for Human, CHO, and Mouse☆12Aug 24, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10May 31, 2022Updated 4 years ago
- ☆20May 1, 2023Updated 3 years ago
- Pipeline for analysis of Dropseq single cell data☆11Nov 14, 2024Updated last year
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Oct 19, 2026Updated last week
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆22Jun 2, 2020Updated 6 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- personal genome constructor☆11May 29, 2025Updated last year
- ☆30Jul 15, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Feb 9, 2024Updated 2 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- A repository of case studies using ProjecTILs☆16Jul 26, 2024Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆298Jul 12, 2024Updated 2 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Jan 6, 2025Updated last year
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39May 15, 2020Updated 6 years ago
- ☆15Jul 11, 2023Updated 3 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 9 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆106Nov 22, 2022Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- Population balance analysis☆47Apr 25, 2019Updated 7 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆29Jan 27, 2021Updated 5 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 6 months ago
- Presentation at the Single Cell Nanocourse in Spring 2017 at Harvard Medical School☆10Mar 7, 2017Updated 9 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Secreted Protein Activity Inference☆34Jul 31, 2026Updated 2 months ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Feb 9, 2019Updated 7 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated last year