ambrosejcarr / seqcLinks
Single-Cell Sequencing Quality Control and Processing Software
☆30Updated 6 years ago
Alternatives and similar repositories for seqc
Users that are interested in seqc are comparing it to the libraries listed below
Sorting:
- ☆25Updated 5 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆43Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- An R-based interface for loom files☆67Updated 5 years ago
- Single-cell Case Control Analysis☆52Updated this week
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- ☆29Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆37Updated 9 years ago
- ☆34Updated 6 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year