ambrosejcarr / seqcLinks
Single-Cell Sequencing Quality Control and Processing Software
☆30Updated 6 years ago
Alternatives and similar repositories for seqc
Users that are interested in seqc are comparing it to the libraries listed below
Sorting:
- ☆26Updated 7 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 months ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆43Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- ☆29Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- ☆34Updated 6 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- ☆48Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- An analytics package for single cell data☆22Updated 3 years ago
- ☆48Updated 7 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- ☆23Updated 3 months ago
- ☆24Updated 5 months ago
- ☆55Updated 5 years ago