☆11Jan 7, 2020Updated 6 years ago
Alternatives and similar repositories for scPanoView
Users that are interested in scPanoView are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Mar 30, 2021Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Nov 14, 2022Updated 3 years ago
- ☆13Mar 20, 2021Updated 5 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- API providing access to papers and authors scraped from biorxiv.org☆56Mar 1, 2023Updated 3 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- ☆27Aug 9, 2019Updated 6 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- BEER: Batch EffEct Remover for single-cell data☆24Jan 9, 2025Updated last year
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 5 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 6 months ago
- ☆20Mar 28, 2017Updated 8 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago