califano-lab / single-cell-pipelineLinks
☆50Updated 5 years ago
Alternatives and similar repositories for single-cell-pipeline
Users that are interested in single-cell-pipeline are comparing it to the libraries listed below
Sorting:
- Functions for single cell data analysis☆32Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 5 months ago
- A pipeline for scRNA-seq data analysis☆15Updated 6 months ago
- analysis script for GBM single cell RNA seq data☆21Updated 4 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆41Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- ☆58Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆24Updated 3 months ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 10 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Functional Inference of Gene Regulation☆46Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆33Updated 10 months ago
- ☆62Updated 6 years ago
- scWGCNA☆61Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- A R package for advanced single cell data viz☆68Updated last month