☆51Jan 16, 2020Updated 6 years ago
Alternatives and similar repositories for single-cell-pipeline
Users that are interested in single-cell-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for Protein activity analysis of single-cell RNAseq.☆87Jun 17, 2026Updated 2 months ago
- Network Reverse Engineering through AP inference of Mutual Information☆90Mar 6, 2023Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆55Feb 16, 2026Updated 6 months ago
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 5 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Jun 12, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆19May 25, 2021Updated 5 years ago
- ☆17May 15, 2024Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Viscello for Visualization of Single Cell Data☆26Oct 5, 2024Updated last year
- ☆16Jul 9, 2024Updated 2 years ago
- ☆43Jun 11, 2022Updated 4 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆18Nov 30, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BioTIP: Biological Tipping-Point Identification and Characterization☆24Oct 20, 2025Updated 10 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 10 months ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- scEntropy method and scEGMM framework☆18Oct 26, 2019Updated 6 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 6 years ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 4 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 8 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆25Jul 2, 2025Updated last year
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Jul 9, 2026Updated last month
- ☆30Jul 8, 2018Updated 8 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- ☆17Apr 2, 2023Updated 3 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 6 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆98Jul 1, 2021Updated 5 years ago
- ☆16Apr 11, 2022Updated 4 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jul 25, 2026Updated last month
- ☆11Jun 26, 2020Updated 6 years ago