califano-lab / single-cell-pipeline
☆45Updated 5 years ago
Alternatives and similar repositories for single-cell-pipeline:
Users that are interested in single-cell-pipeline are comparing it to the libraries listed below
- Functions for single cell data analysis☆31Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- scWGCNA☆58Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆59Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- ☆40Updated 3 years ago
- A pipeline for scRNA-seq data analysis☆12Updated 3 weeks ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 3 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆15Updated 11 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 6 months ago