scverse / scanpy_usageLinks
Scanpy use cases.
☆87Updated 5 years ago
Alternatives and similar repositories for scanpy_usage
Users that are interested in scanpy_usage are comparing it to the libraries listed below
Sorting:
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆71Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Updated last month
- ☆96Updated 4 years ago
- ☆131Updated 2 years ago
- Doublet detection in single-cell RNA-seq data.☆96Updated 10 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated 2 weeks ago
- Convert between AnnData and SingleCellExperiment☆142Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- data and model repository for single-cell data☆136Updated last year
- ☆57Updated 7 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆123Updated 2 weeks ago
- Tools for single-cell data processing☆128Updated last year
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆178Updated 3 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆31Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Test genes for Spatial Variation☆178Updated last year
- ☆69Updated 7 years ago
- software to detect doublets☆95Updated 11 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago