scverse / scanpy_usageLinks
Scanpy use cases.
☆85Updated 4 years ago
Alternatives and similar repositories for scanpy_usage
Users that are interested in scanpy_usage are comparing it to the libraries listed below
Sorting:
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆150Updated last month
- ☆69Updated last year
- Single-Cell Clustering Assessment Framework☆103Updated last year
- ☆130Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆91Updated 5 years ago
- Convert between AnnData and SingleCellExperiment☆137Updated this week
- ☆90Updated 4 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- ☆55Updated 7 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 3 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated 8 months ago
- ☆69Updated 7 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 7 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆64Updated last year
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- trajectory inference☆104Updated 5 months ago
- Doublet detection in single-cell RNA-seq data.☆91Updated 5 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated this week
- software to detect doublets☆93Updated 6 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Clonotype Neighbor Graph Analysis☆89Updated 3 weeks ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 5 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆31Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago